Templates for Your Project

The following files can be downloaded to set up your own SPOT project ("myProject").

• myProject.conf.

  ### myProject.conf: template for user defined configuration files
  ### Basically, you have to enter the name of the R interface to your algorithm in line 4.
  alg.path="."
  alg.func = "startMyAlgorithm"
  alg.seed = 1235
  spot.seed = 125
  auto.loop.steps = 50;
  init.design.func = "spotCreateDesignLhd";
  init.design.size = 10;
  init.design.repeats  = 1;
  seq.design.maxRepeats = 5;
  seq.design.size = 250
  seq.predictionModel.func = "spotPredictRandomForest"
  io.verbosity=3
  

• myProject.roi.

  ### myProject.roi: roi template for user defined region of interest files
  ### Variables which should be optimized are listed here. 
  ### Each line describes one variable, its ranges, and type
  ### Space (" ") is used as a separator
  name low high type
  VARA 0 1 INT
  VARB 0 100 FLOAT
  

• myProject.apd.

  ### myProject.apd: template for user defined apf files
  ### Define values from the problem design, e.g., dim = 10
  var1 = value1
  var2 = value2
  var3 = value2